Most fresh water boats operate on and open loop system, meaning that water from the lake directly cools the engine and is returned to the lake. Fig. 13 is the open loop system that comes standard with our boats.
In an open loop system the water does not flow through to the headers until the thermostat opens.
The fresh water pump picks up lake water sending it to water pump on the engine which then travels though the engine block then out through the thermostat returning to the lake through the cooling jackets on the exhaust manifolds.
So unless you have a closed loop system or someone has added a bypass between the fresh water pump and the the engine water pump circuit then the water will not flow through the headers until the thermostat opens as this part occurs after the thermostat.
Many boats that operate in salt water use a closed loop system.
In a closed loop system the fresh water pump picks up the lake water and flows it through a heat exchanger which then would return it back to the lake direct through the headers. (does not flow through the thermostat). The water (coolant) that cools the engine is in a closed loop system just like your car engine that is circulated by the water pump on the engine, the heat exchanger works just like the radiator in your car.